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1

Protein Engineering, Design and Selection

Chica, Roberto A

Journal:

Protein Engineering Design and Selection

Year:

2020

File:

PDF, 103 KB

2020

2

Semi-rational approaches to engineering enzyme activity: combining the benefits of directed evolution and rational design

Roberto A Chica, Nicolas Doucet, Joelle N Pelletier

Journal:

Current Opinion in Biotechnology

Year:

2005

Language:

english

File:

PDF, 196 KB

english, 2005

3

Tissue transglutaminase acylation: Proposed role of conserved active site Tyr and Trp residues revealed by molecular modeling of peptide substrate binding

Roberto A. Chica, Paul Gagnon, Jeffrey W. Keillor, Joelle N. Pelletier

Journal:

Protein Science

Year:

2004

Language:

english

File:

PDF, 328 KB

english, 2004

4

Photolabeling of Tissue Transglutaminase Reveals the Binding Mode of Potent Cinnamoyl Inhibitors†

Pardin, Christophe, Roy, Isabelle, Chica, Roberto A., Bonneil, Eric, Thibault, Pierre, Lubell, William D., Pelletier, Joelle N., Keillor, Jeffrey W.

Journal:

Year:

2009

Language:

english

File:

PDF, 2.91 MB

english, 2009

5

Multistate approaches in computational protein design

James A. Davey, Roberto A. Chica

Journal:

Protein Science

Year:

2012

Language:

english

File:

PDF, 550 KB

english, 2012

6

Expression and rapid purification of highly active hexahistidine-tagged guinea pig liver transglutaminase

Steve M.F.G. Gillet, Roberto A. Chica, Jeffrey W. Keillor, Joelle N. Pelletier

Journal:

Protein Expression and Purification

Year:

2004

Language:

english

File:

PDF, 228 KB

english, 2004

7

The bioorganic chemistry of transglutaminase — from mechanism to inhibition and engineering

Keillor, Jeffrey W, Chica, Roberto A, Chabot, Nicolas, Vinci, Valerio, Pardin, Christophe, Fortin, Emanuelle, Gillet, Steve M.F.G, Nakano, Yukiko, Kaartinen, Mari T, Pelletier, Joelle N, Lubell, Willi

Journal:

Canadian Journal of Chemistry

Year:

2008

File:

PDF, 643 KB

2008

8

A high-throughput assay for screening l- or d-amino acid specific aminotransferase mutant libraries

Walton, Curtis J.W., Chica, Roberto A.

Journal:

Analytical Biochemistry

Year:

2013

Language:

english

File:

PDF, 791 KB

english, 2013

9

Continuous colorimetric screening assay for detection of d-amino acid aminotransferase mutants displaying altered substrate specificity

Barber, Janet E.B., Damry, Adam M., Calderini, Guido F., Walton, Curtis J.W., Chica, Roberto A.

Journal:

Analytical Biochemistry

Year:

2014

Language:

english

File:

PDF, 880 KB

english, 2014

10

Improving the accuracy of protein stability predictions with multistate design using a variety of backbone ensembles

Davey, James A., Chica, Roberto A.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 772 KB

english, 2014

11

Bioanalysis for Biocatalysis: Multiplexed Capillary Electrophoresis–Mass Spectrometry Assay for Aminotransferase Substrate Discovery and Specificity Profiling

Mironov, Gleb G., St-Jacques, Antony D., Mungham, Alexander, Eason, Matthew G., Chica, Roberto A., Berezovski, Maxim V.

Journal:

Journal of the American Chemical Society

Year:

2013

Language:

english

File:

PDF, 1.76 MB

english, 2013

12

Optimization of rotamers prior to template minimization improves stability predictions made by computational protein design

Davey, James A., Chica, Roberto A.

Journal:

Protein Science

Year:

2015

Language:

english

File:

PDF, 7.76 MB

english, 2015

13

Discovery of Substrates for a SET Domain Lysine Methyltransferase Predicted by Multistate Computational Protein Design

Lanouette, Sylvain, Davey, James A., Elisma, Fred, Ning, Zhibin, Figeys, Daniel, Chica, Roberto A., Couture, Jean-François

Journal:

Year:

2015

Language:

english

File:

PDF, 1.97 MB

english, 2015

14

Protein engineering in the 21 st century

Chica, Roberto A.

Journal:

Protein Science

Year:

2015

Language:

english

File:

PDF, 390 KB

english, 2015

15

The Effects of Proresolution of Ellagic Acid in an Experimental Model of Allergic Airway Inflammation

de Freitas Alves, Claudiney, Angeli, Giovanna Natalia, Favarin, Daniely Cornélio, Lemos de Andrade, Edinéia, Lazo Chica, Javier Emilio, Faccioli, Lúcia Helena, Roberto da Silva, Paulo, de Paula Rogeri

Journal:

Mediators of Inflammation

Year:

2013

Language:

english

File:

PDF, 1.65 MB

english, 2013

16

Prediction of Stable Globular Proteins Using Negative Design with Non-native Backbone Ensembles

Davey, James A., Damry, Adam M., Euler, Christian K., Goto, Natalie K., Chica, Roberto A.

Journal:

Year:

2015

Language:

english

File:

PDF, 2.86 MB

english, 2015

17

Specificity of Transglutaminase-Catalyzed Peptide Synthesis

St-Jacques, Antony D., Rachel, Natalie M., Curry, Dan R., Gillet, Steve M.F.G., Clouthier, Christopher M., Keillor, Jeffrey W., Pelletier, Joelle N., Chica, Roberto A.

Journal:

Journal of Molecular Catalysis B: Enzymatic

Year:

2015

Language:

english

File:

PDF, 1.01 MB

english, 2015

18

Generation of longer emission wavelength red fluorescent proteins using computationally designed libraries

Roberto A. Chica, Matthew M. Moore, Benjamin D. Allen and Stephen L. Mayo

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.26 MB

english, 2010

19

Brighter Red Fluorescent Proteins by Rational Design of Triple-Decker Motif

Pandelieva, Antonia T., Baran, Miranda J., Calderini, Guido F., McCann, Jenna L., Tremblay, Véronique, Sarvan, Sabina, Davey, James A., Couture, Jean-François, Chica, Roberto A.

Journal:

ACS Chemical Biology

Year:

2016

Language:

english

File:

PDF, 1.99 MB

english, 2016

20

Turning a Negative into a Positive: Conversion of a Homodimer into a Heterodimer Using Negative State Repertoires

Davey, James A., Chica, Roberto A.

Journal:

Year:

2016

Language:

english

File:

PDF, 337 KB

english, 2016

21

Energy Efficiency Achievements in 5 Years Through Experimental Research in KUBIK

Garay, Roberto, Chica, José Antonio, Apraiz, Inés, Campos, José M., Tellado, Borja, Uriarte, Amaia, Sanchez, Víctor

Journal:

Energy Procedia

Year:

2015

Language:

english

File:

PDF, 242 KB

english, 2015

22

Multiscale acquisition and presentation of very large artifacts

Callieri, Marco, Chica, Antoni, Dellepiane, Matteo, Besora, Isaac, Corsini, Massimiliano, Moyés, Jordi, Ranzuglia, Guido, Scopigno, Roberto, Brunet, Pere

Journal:

Journal on Computing and Cultural Heritage

Year:

2011

Language:

english

File:

PDF, 21.68 MB

english, 2011

23

Structure-guided rational design of red fluorescent proteins: towards designer genetically-encoded fluorophores

Eason, Matthew G, Damry, Adam M, Chica, Roberto A

Journal:

Current Opinion in Structural Biology

Year:

2017

Language:

english

File:

PDF, 1.44 MB

english, 2017

24

DIABETIC KETOACIDOSIS WITH HYPERTRIGLYCERIDEMIA-INDUCED ACUTE PANCREATITIS AS FIRST PRESENTATION OF DIABETES MELLITUS: REPORT OF THREE CASES

Wang, Yuchen, Attar, Bashar M., Bedrose, Sara, Trick, William, Rivas-Chicas, Oscar, Simons-Linares, Carlos Roberto, Onyenwenyi, Chioma, Siddamesetti, Sisir, Fogelfeld, Leon

Journal:

AACE Clinical Case Reports

Year:

2017

Language:

english

File:

PDF, 895 KB

english, 2017

25

Engineered aminotransferase for the production of D-phenylalanine derivatives using biocatalytic cascades

Walton, Curtis, Parmeggiani, Fabio, Barber, Janet, McCann, Jenna, Turner, Nicholas J, Chica, Roberto

Journal:

Year:

2017

Language:

english

File:

PDF, 3.62 MB

english, 2017

26

Rational design of proteins that exchange on functional timescales

Davey, James A, Damry, Adam M, Goto, Natalie K, Chica, Roberto A

Journal:

Nature Chemical Biology

Year:

2017

Language:

english

File:

PDF, 2.17 MB

english, 2017

27

ProtaBank: A repository for protein design and engineering data

Wang, Connie Y., Chang, Paul M., Ary, Marie L., Allen, Benjamin D., Chica, Roberto A., Mayo, Stephen L., Olafson, Barry D.

Journal:

Protein Science

Year:

2018

Language:

english

File:

PDF, 1.80 MB

english, 2018

28

Structural determinants of the stereo-inverting activity of Pseudomonas stutzeri D-phenylglycine aminotransferase

Walton, Curtis J, Thiebaut, Frédéric, Brunzelle, Joseph S, Couture, Jean-François, Chica, Roberto A.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.25 MB

english, 2018

29

Designer proteins activate fluorescent molecules

Chica, Roberto A.

Journal:

Year:

2018

Language:

english

File:

PDF, 689 KB

english, 2018

30

Papel do óxido nítrico no desenvolvimento de lesões cardíacas na fase aguda da infecção experimental pelo Trypanosoma cruzi

Borges, Cláudia Renata Bibiano, Rodrigues Junior, Virmondes, Reis, Marlene Antônia dos, Castellano, Lúcio Roberto, Chica, Javier Emilio Lazo, Pereira, Sanívia Aparecida de Lima, Santos, Edjane Souza,

Journal:

Revista da Sociedade Brasileira de Medicina Tropical

Year:

2009

File:

PDF, 276 KB

2009

31

Computational Design of Multi-Substrate Enzyme Specificity

St-Jacques, Antony D., Eyahpaise, Marie-Ève Catherine, Chica, Roberto A.

Journal:

Year:

2019

Language:

english

File:

PDF, 737 KB

english, 2019

32

Computational Design of Multi-Substrate Enzyme Specificity

St-Jacques, Antony D., Eyahpaise, Marie-Ève Catherine, Chica, Roberto A.

Journal:

Year:

2019

File:

PDF, 737 KB

2019

33

Metal Thio/Selenophosphates: A Novel Two-Dimensional Materials System

Cheng, Matthew, do Reis, Roberto, Chica, Daniel, Kanatzidis, Mercouri, Dravid, Vinayak P.

Journal:

Microscopy and Microanalysis

Year:

2019

Language:

english

File:

PDF, 2.80 MB

english, 2019

34

Parametric Analysis of the Mandrel Geometrical Data in a Cold Expansion Process of Small Holes Drilled in Thick Plates

Calaf-Chica, Jose, Marín, Marta María, Rubio, Eva María, Teti, Roberto, Segreto, Tiziana

Journal:

Year:

2019

Language:

english

File:

PDF, 10.05 MB

english, 2019

35

Origin of conformational dynamics in a globular protein

Damry, Adam M., Mayer, Marc M., Broom, Aron, Goto, Natalie K., Chica, Roberto A.

Journal:

Communications Biology

Year:

2019

File:

PDF, 1.42 MB

2019

36

Diabetes Ketoacidosis with Hypertriglyceridemia Induced Acute Pancreatitis as Initial Presentation of Diabetes Mellitus: A Report of Three Cases

Wang, Yuchen, Attar, Bashar M., Siddamsetti, Sisir, Rivas-Chicas, Oscar, Trick, William, Simons-Linares, Carlos Roberto, Fogelfeld, Leon

Journal:

American Journal of Gastroenterology

Year:

2016

File:

PDF, 298 KB

2016

37

Parametric Analysis of the Mandrel Geometrical Data in a Cold Expansion Process of Small Holes Drilled in Thick Plates

Calaf-Chica, Jose, Marín, Marta María, Rubio, Eva María, Teti, Roberto, Segreto, Tiziana

Journal:

Year:

2019

File:

PDF, 10.05 MB

2019

38

Ensemble-based enzyme design can recapitulate the effects of laboratory directed evolution in silico

Broom, Aron, Rakotoharisoa, Rojo V., Thompson, Michael C., Zarifi, Niayesh, Nguyen, Erin, Mukhametzhanov, Nurzhan, Liu, Lin, Fraser, James S., Chica, Roberto A.

Journal:

Nature Communications

Year:

2020

File:

PDF, 2.08 MB

2020

39

Structural, Chemical, and Local Properties of Layered Metal Chalcophosphate Systems

Cheng, Matthew, Reis, Roberto dos, Chica, Daniel, Kanatzidis, Mercouri, Dravid, Vinayak

Journal:

Microscopy and Microanalysis

Year:

2020

File:

PDF, 526 KB

2020

40

Genetically Encoded Fluorescent Biosensor for Rapid Detection of Protein Expression

Eason, Matthew G., Pandelieva, Antonia T., Mayer, Marc M., Khan, Safwat T., Garcia, Hernan G., Chica, Roberto A.

Journal:

ACS Synthetic Biology

Year:

2020

File:

PDF, 2.47 MB

2020